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[Bot] Update dependencies (#2845)

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* Update dependencies

* fix: revert pip upgrade on graalpy for now

Signed-off-by: Henry Schreiner <henryfs@princeton.edu>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* fix: older pip for graalpy on Windows

Assisted-by: OpenCode:glm-5.1
Signed-off-by: Henry Schreiner <henryfs@princeton.edu>

---------

Signed-off-by: Henry Schreiner <henryfs@princeton.edu>
Co-authored-by: cibuildwheel-bot[bot] <83877280+cibuildwheel-bot[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <henryfs@princeton.edu>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
This commit is contained in:
cibuildwheel-bot[bot]
2026-05-12 21:59:10 -04:00
committed by GitHub
co-authored by cibuildwheel-bot[bot] <83877280+cibuildwheel-bot[bot]@users.noreply.github.com> Henry Schreiner pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
parent 3617733645
commit ec0977e5f6
17 changed files with 85 additions and 54 deletions
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@@ -80,8 +80,8 @@ title: Working examples
| [sourmash][] | ![github icon][] | ![apple icon][] ![linux icon][] ![windows icon][] ![pyodide icon][] | Quickly search, compare, and analyze genomic and metagenomic data sets. |
| [python-rapidjson][] | ![travisci icon][] ![gitlab icon][] | ![windows icon][] ![linux icon][] | Python wrapper around rapidjson |
| [pybind11 python_example][] | ![github icon][] | ![windows icon][] ![apple icon][] ![linux icon][] ![pyodide icon][] | Example pybind11 module built with a Python-based build system |
| [abess][] | ![github icon][] | ![windows icon][] ![apple icon][] ![linux icon][] | A fast best-subset selection library. It uses cibuildwheel to build a large project with C++ extensions. |
| [python-snappy][] | ![github icon][] | ![apple icon][] ![linux icon][] ![windows icon][] | Python bindings for the snappy google library |
| [abess][] | ![github icon][] | ![windows icon][] ![apple icon][] ![linux icon][] | A fast best-subset selection library. It uses cibuildwheel to build a large project with C++ extensions. |
| [Confluent client for Kafka][] | ![travisci icon][] | ![apple icon][] ![linux icon][] ![windows icon][] | setup in `tools/wheels/build-wheels.bat` |
| [jq.py][] | ![travisci icon][] | ![apple icon][] ![linux icon][] | Python bindings for jq |
| [cyvcf2][] | ![github icon][] | ![apple icon][] ![linux icon][] | cython + htslib == fast VCF and BCF processing |
@@ -191,8 +191,8 @@ title: Working examples
[sourmash]: https://github.com/sourmash-bio/sourmash
[python-rapidjson]: https://github.com/python-rapidjson/python-rapidjson
[pybind11 python_example]: https://github.com/pybind/python_example
[abess]: https://github.com/abess-team/abess
[python-snappy]: https://github.com/intake/python-snappy
[abess]: https://github.com/abess-team/abess
[Confluent client for Kafka]: https://github.com/confluentinc/confluent-kafka-python
[jq.py]: https://github.com/mwilliamson/jq.py
[cyvcf2]: https://github.com/brentp/cyvcf2