[pre-commit.ci] pre-commit autoupdate (#2959)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: c59bba8fb259db0fec2bbb77ad8ba51ea7341b56 → 39d9ac5938dadb73df0564a45f163e25ff9fa6e2](https://github.com/astral-sh/ruff-pre-commit/compare/c59bba8fb259db0fec2bbb77ad8ba51ea7341b56...39d9ac5938dadb73df0564a45f163e25ff9fa6e2)
- [github.com/pre-commit/mirrors-mypy: d2823d321df3af8f878f7ee3414dc94d037145b9 → 41e691678310dfd3833f7ab4e180ddb014310356](https://github.com/pre-commit/mirrors-mypy/compare/d2823d321df3af8f878f7ee3414dc94d037145b9...41e691678310dfd3833f7ab4e180ddb014310356)
- [github.com/codespell-project/codespell: 2ccb47ff45ad361a21071a7eedda4c37e6ae8c5a → 57b21406f092110c18776e39b0bda50d37c945c8](https://github.com/codespell-project/codespell/compare/2ccb47ff45ad361a21071a7eedda4c37e6ae8c5a...57b21406f092110c18776e39b0bda50d37c945c8)

* chore: fix lint errors from new ruff rules

Ruff 0.16 enables BLE, TRY, and N999 by default. Use local noqa
excludes for the blind-except catches, ignore TRY002 and N999 in tests,
and drop the pylint equivalents.

Assisted-by: ClaudeCode:claude-opus-5

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <henryfs@princeton.edu>

pyproject.toml

@@ -166,6 +166,7 @@ messages_control.disable = [
   "wrong-import-position",
   "unused-argument",  # Handled by Ruff
   "import-outside-toplevel",  # Handled by Ruff
+  "broad-exception-caught",  # Handled by Ruff
   "broad-exception-raised",  # Could be improved eventually
   "consider-using-in",  # MyPy can't narrow "in"
 ]
@@ -217,6 +218,7 @@ ignore = [
   "PT007",   # Lists of tuples in Pytest
   "PYI025",  # Set as AbstractSet
   "PTH123",  # open -> Path.open
+  "TRY002",  # Create your own exception
 ]
 flake8-unused-arguments.ignore-variadic-names = true
 flake8-tidy-imports.ban-relative-imports = "all"
@@ -234,7 +236,7 @@ future-annotations = true
 
 [tool.ruff.lint.per-file-ignores]
 "unit_test/*" = ["PLC1901", "TID252"]
-"test/*" = ["TID252"]
+"test/*" = ["TID252", "N999"]
 "bin/*" = ["TID251"]
 "cibuildwheel/resources/install_certifi.py" = ["PTH"]